Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs4903173 chr14:74512074 G/A 0.000237 174 25.28 27.43 10.43 KM Plot
PCPG rs4903174 chr14:74521450 G/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs4903181 chr14:74558984 T/A 2.62E-5 173 25.47 27.43 10.3 KM Plot
PCPG rs4903184 chr14:74569593 A/G 2.24E-5 176 25.4 27.43 10.3 KM Plot
PCPG rs4903185 chr14:74578641 T/C 5.67E-7 175 25.4 27.43 7.4 KM Plot
PCPG rs4903198 chr14:74632147 G/T 1.72E-5 178 25.17 27.43 10.3 KM Plot
PCPG rs4903205 chr14:74669910 C/T 5.98E-7 173 25.47 27.75 10.3 KM Plot
PCPG rs4909616 chr8:135500567 A/G 0.000327 177 23.88 25.53 33.38 KM Plot
PCPG rs4909617 chr8:135500646 G/T 0.000354 175 23.53 25.53 34.73 KM Plot
PCPG rs4923830 chr15:39749930 T/A 0.000433 177 26.33 27.27 24.85 KM Plot
PCPG rs4924699 chr15:43201109 G/A 3.36E-14 174 25.7 24.7 3.17 KM Plot
PCPG rs4937342 chr11:128398309 G/T 0.000441 178 4.45 25.53 25.4 KM Plot
PCPG rs4941854 chr13:37598961 C/T 0.000285 178 4.17 24.7 25.7 KM Plot
PCPG rs4941855 chr13:37599724 A/G 0.000285 178 4.17 24.7 25.7 KM Plot
PCPG rs4954623 chr2:136535876 G/A 2.86E-5 175 9.72 26.22 25.53 KM Plot